Faculty Database - NAKAMURA Kazuyuki

Books and Papers

Academic Qualifications

Career History

Academic Associations Membership

Research Topics, Consignment Studies & KAKENHI Researches

Web Sites

（Last updated : 2025-06-08 15:42:06）

NAKAMURA Kazuyuki
Department Undergraduate School , School of Interdisciplinary Mathematical Sciences

Position Professor

■ Books and Papers

1.	2025/05	Article	Cell position-based evaluation of mechanical features of cells in multicellular systems Journal of Theoretical Biology (Collaboration)
2.	2025	Article	The Application of Zig-Zag Sampler in Sequential Markov Chain Monte Carlo Journal of Information Processing 33,pp.231-244 (Collaboration)
3.	2024/01	Article	Representation of Protein Dynamics Disentangled by Time-Structure-Based Prior Journal of Chemical Theory and Computation (Collaboration)
4.	2024	Article	Deep learning-based flocculation sensor for automatic control of flocculant dose in sludge dewatering processes during wastewater treatment Water Research 260 (Collaboration)
5.	2024	Article	Effective mechanical potential of cell–cell interaction in tissues harboring cavity and in cell sheet toward morphogenesis Frontiers in Cell and Developmental Biology 12 (Collaboration)
6.	2024	Article	Refinement of nonlinear seismic response analysis model for bridges using data assimilation technology Artificial Intelligence and Data Science pp.42-52 (Collaboration)
7.	2023	Article	Effective mechanical potential of cell–Cell interaction explains three-dimensional morphologies during early embryogenesis PLoS Computational Biology 19(8 August) (Collaboration)
8.	2023	Article	Ensemble kalman variational objective: a variational inference framework for sequential variational auto-encoders Nonlinear Theory and Its Applications, IEICE 14(4),pp.691-717 (Collaboration)
9.	2022/10	Article	An Online System of Detecting Anomalies and Estimating Cycle Times for Production Lines IECON 2022 – 48th Annual Conference of the IEEE Industrial Electronics Society (Collaboration)
10.	2022/10	Article	Occupancy Detection for General Households by Bidirectional LSTM with Attention IECON 2022 – 48th Annual Conference of the IEEE Industrial Electronics Society (Collaboration)
11.	2022/03	Article	The Influence of Velocity Refresh in Sequential MCMC with the Invertible Particle Flow and Discrete Bouncy Particle Sampler Proceedings of the ISCIE International Symposium on Stochastic Systems Theory and its Applications 2022,pp.18-23 (Collaboration)
12.	2022	Article	Glycolytic oscillations in HeLa cervical cancer cell spheroids FEBS Journal 289(18) (Collaboration)
13.	2022	Article	Real-time Linear Operator Construction and State Estimation with the Kalman Filter Journal of Information Processing 30 (Collaboration)
14.	2020	Article	LSLOCK: A method to estimate state space model by spatiotemporal continuity Proc. CONTROLO 2020, Lecture Notes in Electrical Engineering 695,pp.342-351 (Collaboration)
15.	2020	Article	Resolving the data asynchronicity in high-speed atomic force microscopy measurement via the Kalman Smoother Scientific Reports 10,pp.18393 (Collaboration)
16.	2019	Article	Bayesian Estimation of Deer Population DynamicsUsing Hamiltonian Monte Carlo Algorithm Proc. 50th ISCIE International Symposium on Stochastic Systems Theory and Its Applications pp.19-24 (Collaboration)
17.	2019	Article	Evaluation System for Groove Feelings Evoked by Drum Sounds Proc. 50th ISCIE International Symposium on Stochastic Systems Theory and Its Applicati pp.142-146 (Collaboration)
18.	2018	Article	Analysis of Exchange Rates and Gold Price Using Relative Noise Contribution pp.142-146 (Collaboration)
19.	2018	Article	Multiresolutional Hierarchical Bayesian NMF for Detailed Audio Analysis of Music Performances Proceedings of APSIPA Annual Summit and Conference (ASC) (Collaboration)
20.	2018	Article	Photoplethysmogram at green light: Where does chaos arise from? Chaos, Solitons & Fractals 116,pp.157-165 (Collaboration)
21.	2017	Book	Music Chord Recognition From Audio Data Using Bidirectional Encoder-decoder LSTMs Proceedings of APSIPA Annual Summit and Conference (Collaboration)
22.	2017	Article	Automatic selection and concatenation system for jazz piano trio using case data Proc. 48th ISCIE International Symposium on Stochastic Systems Theory and Its Applications pp.98-104 (Collaboration)
23.	2017	Article	Jazz Piano Trio Synthesizing System Based on HMM and DNN Proceedings of 14th Sound and Music Computing Conference pp.153-158 (Collaboration)
24.	2017	Article	Prediction System of Subway Traffic Flow and Appropriate Parameters Shifting Proc. 48th ISCIE International Symposium on Stochastic Systems Theory and Its Applications pp.168-173 (Collaboration)
25.	2016	Article	Fast and stable estimation of macroscopic parameters in particle systems by data assimilation Proceedings of the 47th ISCIE International Symposium on Stochastic Systems Theory and Its Applications pp.132-136 (Collaboration)
26.	2016	Article	Local noise sensitivity: Insight into the noise effect on chaotic dynamics Chaos 26 (Collaboration)
27.	2015	Article	Estimating cellular parameters through optimization procedures: elementary principles and applications Frontiers in Physiology (Collaboration)
28.	2014	Article	A New Setting Method of Friction Parameter for Real-Time Tsunami Run-Up Simulations Based on Inundation Observation 62,pp.167-178 (Collaboration)
29.	2014	Article	Rapid detection of the switching point in a financial market structure using the particle filter Journal of Statistical Computation and Simulation 84(10),pp.2073-2090 (Collaboration)
30.	2012	Article	A high-resolution shape fitting and simulation demonstrated equatorial cell surface softening during cytokinesis and its promotive role in cytokinesis PLoS ONE 7,pp.e31607 (Collaboration)
31.	2012	Article	Data assimilation using the particle filter for identifying the elasto-plastic material properties of geomaterials International Journal for Numerical and Analytical Methods in Geomechanics (Collaboration)
32.	2012	Article	Extraction of groove feelings from drum data using non-negative matrix factorization Proceedings of SCIS-ISIS 2012 pp.125-130 (Collaboration)
33.	2012	Article	Parameter identification for Cam-clay model in partially loading tests using the particle filter Soils and Foundations 52(2),pp.279-298 (Collaboration)
34.	2011	Article	Detecting Precursory Events in Time Series Data by an Extension of Singular Spectrum Transformation Proceedings of the 10th WSEAS International Conference on Applied Computer Science pp.366-374 (Collaboration)
35.	2011	Article	Onset Time Determination of Precursory Events of Singular Spectrum Transformation International Journal of Circuits, Systems and Signal processing 5,pp.46-60 (Collaboration)
36.	2011	Article	Sequential Data Assimilation in Geotechnical Engineering and Its Application to Seepage Analysis Proceedings of 14th International Conference on Information Fusion pp.544-549 (Collaboration)
37.	2010	Article	Constraining interplate frictional parameters by using limited terms of synthetic observation data for afterslip: a preliminary test of data assimilation Theoretical and Applied Mechanics Japan 58,pp.113-120 (Collaboration)
38.	2010	Article	Optimization of boundary condition and physical parameter in an ocean tide model using an evolutionary algorithm Theoretical and Applied Mechanics Japan 58,pp.101-112 (Collaboration)
39.	2009	Article	Accurate ocean tide modeling in southeast Alaska and large tidal dissipation around Glacier Bay Journal of Oceanography 65(3),pp.335-347 (Collaboration)
40.	2009	Article	Parameter estimation of in silico biological pathways with particle filtering towards a petascale computing Proceedings of 14th Pacific Symposium on Biocomputing pp.227-238 (Collaboration)
41.	2009	Article	Particle filtering in data assimilation and its application to estimation of boundary condition of tsunami simulation model Data Assimilation for Atmospheric, Oceanic and Hydrologic Applications pp.353-366 (Collaboration)
42.	2007	Article	A Recursive Recomputation Approach for Smoothing in Nonlinear State-Space Modeling: An Attempt for Reducing Space Complexity IEEE Transactions on Signal Processing 55(11),pp.5167-5178 (Collaboration)
43.	2006	Article	Application of Particle Filter to Identification of Tsunami Simulation Model Proceedings of Joint 3rd International Conference on Soft Computing and Intelligent Systems and 7th International Symposium on advanced Intelligent Systems (Collaboration)
44.	2006	Article	Sequential Data Assimilation: Information Fusion of a Numerical Simulation and Large Scale Observation Data Journal of Universal Computer Science 12,pp.608-626 (Collaboration)
45.	2005	Article	Data Assimilation: Concept and Algorithm Proceedings of the Institute of Statistical Mathematics pp.211-229 (Collaboration)
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■ Academic Qualifications

1.	～2002/03	Department of Mathematical Engineering and Information Physics, Faculty of Engineering, The University of Tokyo, Graduated,
2.	2002/04～2004/03	〔Master Course〕 Mathematical Informatics, Graduate School of Information Science and Technology, The University of Tokyo, Completed,
3.	2004/04～2007/03	〔Doctorial Course〕 Department of Statistical Science, School of Multidisciplinary Sciences, The Graduate University for Advanced Studies, Completed, Doctor of Philosophy

■ Career History

1.	2013/04～2018/03	Associate Professor
2.	2018/04～	Professor

■ Academic Associations Membership

American Statistical Association

■ Research Topics, Consignment Studies & KAKENHI Researches

1.	2023/04～2027/03	Integration of a deep probabilistic model and an outlier detection method with an attention mechanism and its application to super-high dimensional time series data (Key Word : )
2.	2019/04～2023/03	Automation of a state space modeling by an integration of the variational auto encoder and particle filter (Key Word : )
3.	2017/04～2020/03	Music Generation and Analysis Based on Mathematical Modeling of Composiion, Performance and Acoustic Signals (Key Word : )
4.	2015/04～2018/03	Construction of novel principle for knowledge discovery in particle methods for fluid dynamics using statistical models (Key Word : )
5.	2014/04～2018/03	Construction of next-generation data assimilation for the solid Earth science (Key Word : )
6.	2014/04～2018/03	Estimation of cloud bottom height using satellite observation and its application to satellite data assimilation technique (Key Word : )
7.	2014/04～2017/03	Music information processing combining composition, performance and signal models (Key Word : )
8.	2013/04～2016/03	Principles for knowledge discovery through new batch type algorithm of combination of simulation and observation (Key Word : )
9.	2011/04～2014/03	Versatile music processing by combining statistical signal processing and music theory (Key Word : )
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■ Web Sites

https://www.isc.meiji.ac.jp/~knaka/index-j.html