教員データベース - 島田　友裕

主な作品

著書・論文

所属学会

研究課題・受託研究・科研費

（最終更新日：2023-05-18 10:44:17）

  シマダ　トモヒロ   SHIMADA TOMOHIRO
  島田　友裕
   所属   明治大学農学部

職種専任准教授

■ 主な作品

■ 著書・論文

1.	2023/04	論文	Overview of the Molecular Mechanism of Bacterial Environmental Adaptation by Comprehensive Analysis. International journal of molecular sciences 24(8) （共著）
2.	2023/03	論文	Metal-Responsive Transcription Factors Co-Regulate Anti-Sigma Factor (Rsd) and Ribosome Dimerization Factor Expression. International journal of molecular sciences 24(5) （共著）
3.	2023/02	論文	Genomic SELEX Reveals Pervasive Role of the Flagella Master Regulator FlhDC in Carbon Metabolism. International journal of molecular sciences 24(4) （共著）
4.	2022/05	論文	Transcription Factor SrsR (YgfI) Is a Novel Regulator for the Stress-Response Genes in Stationary Phase in Escherichia coli K-12 International Journal of Molecular Sciences 23(11),pp.6055-6055 （共著）
5.	2022/04	論文	Regulatory role of CsuR (YiaU) in determination of cell surface properties of Escherichia coli K-12. Microbiology (Reading, England) 168(4) （共著）
6.	2021/11	論文	Whole set of constitutive promoters for RpoN sigma factor and the regulatory role of its enhancer protein NtrC in Escherichia coli K-12. Microbial genomics 7(11) （共著）
7.	2021/08	論文	Acetate overflow metabolism regulates a major metabolic shift after glucose depletion in Escherichia coli. FEBS letters 595(15),pp.2047-2056 （共著）
8.	2021/07	論文	Hierarchy of transcription factor network in Escherichia coli K-12: H-NS-mediated silencing and Anti-silencing by global regulators. FEMS microbiology reviews （共著）
9.	2021/03	論文	Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis. ACS central science 7(3),pp.476-487 （共著）
10.	2021	論文	Single-Target Regulators Constitute the Minority Group of Transcription Factors in Escherichia coli K-12. Frontiers in microbiology 12,pp.697803-697803 （共著）
11.	2020/10	論文	Expanded roles of pyruvate-sensing PdhR in transcription regulation of the Escherichia coli K-12 genome: fatty acid catabolism and cell motility. Microbial genomics 6(10) （共著）
12.	2020/07	論文	Novel regulators of the csgD gene encoding the master regulator of biofilm formation in Escherichia coli K-12. Microbiology (Reading, England) （共著）
13.	2020/06	論文	Proteomic analysis of haem-binding protein from Arabidopsis thaliana and Cyanidioschyzon merolae. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 375(1801),20190488頁（共著）
14.	2020/02	論文	Author Correction: Regulatory Role of PlaR (YiaJ) for Plant Utilization in Escherichia coli K-12. Scientific reports 10(1),2997頁（共著）
15.	2019/12	論文	Regulatory Role of PlaR (YiaJ) for Plant Utilization in Escherichia coli K-12. Scientific reports 9(1),20415頁（共著）
16.	2019/12	論文	Regulatory role of pyruvate-sensing BtsSR in biofilm formation by Escherichia coli K-12. FEMS microbiology letters 366(24) （共著）
17.	2019/12	論文	The retrograde signaling protein GUN1 regulates tetrapyrrole biosynthesis. Proceedings of the National Academy of Sciences of the United States of America 116(49),24900-24906頁（共著）
18.	2019/08	論文	C-terminal regulatory domain of the ε subunit of Fo F1 ATP synthase enhances the ATP-dependent H+ pumping that is involved in the maintenance of cellular membrane potential in Bacillus subtilis. MicrobiologyOpen 8(8),e00815頁（共著）
19.	2019/01	論文	Regulatory role of CsqR (YihW) in transcription of the genes for catabolism of the anionic sugar sulfoquinovose (SQ) in Escherichia coli K-12. Microbiology (Reading, England) 165(1),78-89頁（共著）
20.	2019	論文	Coordinated Hibernation of Transcriptional and Translational Apparatus during Growth Transition of Escherichia coli to Stationary Phase. mSystems 3(5) （共著）
21.	2019	論文	Coordinated Regulation of Rsd and RMF for Simultaneous Hibernation of Transcription Apparatus and Translation Machinery in Stationary-Phase Escherichia coli. Frontiers in genetics 10,1153頁（共著）
22.	2018/05	論文	Single-target regulators form a minor group of transcription factors in Escherichia coli K-12. Nucleic acids research 46(8),pp.3921-3936 （共著）
23.	2018/01	論文	Identification of YbhA as the pyridoxal 5'-phosphate (PLP) phosphatase in Escherichia coli: Importance of PLP homeostasis on the bacterial growth. The Journal of general and applied microbiology 63(6),pp.362-368 （共著）
24.	2018	著書	Genomic SELEX Screening of Regulatory Targets of Escherichia coli Transcription Factors. Methods in molecular biology (Clifton, N.J.) 1837,49-69頁（共著）
25.	2018	論文	Altered distribution of RNA polymerase lacking the omega subunit within the prophages along the Escherichia coli K-12 genome. mSystems （共著）
26.	2018	論文	Single-target regulators form a minor group of transcription factors in Escherichia coli. Nucleic Acids Research （共著）
27.	2017/12	論文	Regulatory role of XynR (YagI) in catabolism of xylonate in Escherichia coli K-12. FEMS microbiology letters 364(22) （共著）
28.	2017/07	論文	A structural sketch of RcdA, a transcription factor controlling the master regulator of biofilm formation. FEBS letters 591(13),pp.2019-2031 （共著）
29.	2017/04	論文	Conserved two-component Hik34-Rre1 module directly activates heat-stress inducible transcription of major chaperone and other genes in Synechococcus elongatus PCC 7942. Molecular microbiology 104(2),pp.260-277 （共著）
30.	2017	論文	A structural sketch of RcdA, a transcription factor controlling the master regulator of biofilm formation. FEBS Letters （共著）
31.	2017	論文	Conserved two-component Hik34-Rre1 module directly activates heat-stress inducible transcription of major chaperone and other genes in Synechococcus elongatus PCC 7942. Mol Microbiol. （共著）
32.	2017	論文	Identification of YbhA as the pyridoxal 5'-phosphate (PLP) phosphatase in Escherichia coli: Importance of PLP homeostasis on the bacterial growth. J. Gen. Appl. Microbiol. （共著）
33.	2017	論文	Regulatory role of XynR (YagI) in catabolism of xylonate in Escherichia coli K-12. FEMS Microbiology Letters （共著）
34.	2017	論文	The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase. PLoS ONE 12,pp.e0179181 （共著）
35.	2017	論文	The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase. PloS one 12(6),pp.e0179181 （共著）
36.	2016/10	論文	Use of a Bacterial Luciferase Monitoring System To Estimate Real-Time Dynamics of Intracellular Metabolism in Escherichia coli. Applied and environmental microbiology 82(19),pp.5960-8 （共著）
37.	2016/09	論文	Transcription factor DecR (YbaO) controls detoxification of L-cysteine in Escherichia coli. Microbiology (Reading, England) 162(9),pp.1698-1707 （共著）
38.	2016/07	論文	Growth Inhibition by External Potassium of Escherichia coli Lacking PtsN (EIIANtr) Is Caused by Potassium Limitation Mediated by YcgO. Journal of bacteriology 198(13),pp.1868-1882 （共著）
39.	2016/07	論文	Transcription factor CecR (YbiH) regulates a set of genes affecting the sensitivity of Escherichia coli against cefoperazone and chloramphenicol. Microbiology (Reading, England) 162(7),pp.1253-1264 （共著）
40.	2016/03	論文	Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors. Nucleic acids research 44(5),pp.2058-74 （共著）
41.	2016	論文	Differential regulation of rRNA and tRNA transcription from the rRNA-tRNA composite operon in Escherichia coli. PLoS One （共著）
42.	2016	論文	Differential Regulation of rRNA and tRNA Transcription from the rRNA-tRNA Composite Operon in Escherichia coli. PloS one 11(12),pp.e0163057 （共著）
43.	2016	論文	Growth inhibition by external potassium of Escherichia coli lacking PtsN (EIIANtr) is caused by potassium limitation mediated by YcgO. J Bacteriol. （共著）
44.	2016	論文	Transcription factor CecR (YbiH) regulates a set of genes affecting the sensitivity of Escherichia coli against cefoperazone and chloramphenicol. Microbiology （共著）
45.	2016	論文	Transcription factor DecR (YbaO) controls detoxification of L-cysteine in Escherichia coli. Microbiology （共著）
46.	2016	論文	Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors. Nucleic Acids Res. （共著）
47.	2016	論文	Use of a bacterial luciferase monitoring system to estimate real-time dynamics of intracellular metabolism in Escherichia coli. Appl Environ Microbiol. （共著）
48.	2015/11	論文	Expanded roles of two-component response regulator OmpR in Escherichia coli: genomic SELEX search for novel regulation targets. Genes to cells : devoted to molecular & cellular mechanisms 20(11),pp.915-31 （共著）
49.	2015/07	論文	Expanded roles of leucine-responsive regulatory protein in transcription regulation of the Escherichia coli genome: Genomic SELEX screening of the regulation targets. Microbial genomics 1(1),pp.e000001 （共著）
50.	2015	論文	Expanded roles of leucine-responsive regulatory protein in transcription regulation of the Escherichia coli genome: Genomic SELEX screening of the regulation targets. Microbial Genomics. （共著）
51.	2015	論文	Expanded roles of two-component response regulator OmpR in Escherichia coli: Genomic SELEX search for novel regulation targets. Genes Cells. （共著）
52.	2015	論文	Strength and regulation of seven rRNA promoters in Escherichia coli. PLoS ONE. （共著）
53.	2014/08	論文	Intracellular concentrations of 65 species of transcription factors with known regulatory functions in Escherichia coli. Journal of bacteriology 196(15),pp.2718-27 （共著）
54.	2014/07	論文	Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing. mBio 5(4),pp.e01442-14 （共著）
55.	2014/06	論文	Involvement of cAMP-CRP in transcription activation and repression of the pck gene encoding PEP carboxykinase, the key enzyme of gluconeogenesis. FEMS microbiology letters 355(2),pp.93-9 （共著）
56.	2014/05	論文	Roles of cell division control factor SdiA: recognition of quorum sensing signals and modulation of transcription regulation targets. Genes to cells : devoted to molecular & cellular mechanisms 19(5),pp.405-18 （共著）
57.	2014	論文	Intracellular Concentrations of Transcription Factors in Escherichia coli: 65 species with known regulatory functions. Journal of Bacteriology （共著）
58.	2014	論文	Involvement of cAMP-CRP in transcription activation and repression of the pck gene encoding PEP carboxykinase, the key enzyme of gluconeogenesis. FEMS Microbiology Letters. （共著）
59.	2014	論文	Roles of Cell Division Control Factor SdiA: Recognition of Quorum Sensing Signals and Modulation of Transcription Regulation Targets. Genes Cells. （共著）
60.	2014	論文	The Whole Set of Constitutive Promoters Recognized by RNA polymerase RpoD Holoenzyme of Escherichia coli. PLoS ONE （共著）
61.	2014	論文	Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing. MBio. （共著）
62.	2013/12	論文	Screening of promoter-specific transcription factors: multiple regulators for the sdiA gene involved in cell division control and quorum sensing. Microbiology (Reading, England) 159(Pt 12),pp.2501-2512 （共著）
63.	2013/07	論文	Involvement of the ribose operon repressor RbsR in regulation of purine nucleotide synthesis in Escherichia coli. FEMS microbiology letters 344(2),pp.159-65 （共著）
64.	2013/05	論文	Involvement of cyclic AMP receptor protein in regulation of the rmf gene encoding the ribosome modulation factor in Escherichia coli. Journal of bacteriology 195(10),pp.2212-9 （共著）
65.	2013/02	論文	Novel regulator PgrR for switch control of peptidoglycan recycling in Escherichia coli. Genes to cells : devoted to molecular & cellular mechanisms 18(2),pp.123-34 （共著）
66.	2013	論文	A novel regulator PgrR for switch control of peptideglycan recycling in Escherichia coli. Genes Cells. （共著）
67.	2013	論文	Involvement of Cyclic AMP Receptor Protein in Regulation of the rmf Gene Encoding the Ribosome Modulation Factor in Escherichia coli. Journal of Bacteriology. （共著）
68.	2013	論文	Involvement of the Ribose operon Repressor RbsR in Regulation of Purine Nucleotide Synthesis in Escherichia coli. FEMS Microbiology Letters （共著）
69.	2013	論文	Screening of Promoter-Specific Transcription Factors: Multiple Regulators for the sdiA Gene Involved in Cell Division Control and Quorum Sensing. Microbiology. （共著）
70.	2012/12	論文	A novel regulator RcdA of the csgD gene encoding the master regulator of biofilm formation in Escherichia coli. MicrobiologyOpen 1(4),pp.381-94 （共著）
71.	2012	論文	A novel regulator RcdA of the csgD gene encoding the master regulator of biofilm formation in Escherichia coli. MicrobiologyOpen. 1, 381-394. (2012) （共著）
72.	2011/10	論文	Novel roles of LeuO in transcription regulation of E. coli genome: antagonistic interplay with the universal silencer H-NS. Molecular microbiology 82(2),pp.378-97 （共著）
73.	2011/02	論文	Novel members of the Cra regulon involved in carbon metabolism in Escherichia coli. Journal of bacteriology 193(3),pp.649-59 （共著）
74.	2011	論文	Novel Members of the cAMP Receptor Protein (CRP) Regulon for Transport and Metabolism of Carbon Sources. PLoS ONE. （共著）
75.	2011	論文	Novel Members of the Cra Regulon Involved in Carbon Metabolism in Escherichia coli. Journal of Bacteriology （共著）
76.	2011	論文	Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources. PloS one 6(6),pp.e20081 （共著）
77.	2011	論文	Novel roles of LeuO in transcription regulation of E.coli genome: antagonistic interplay with the universal silencer H-NS. Mol Microbiol. （共著）
78.	2009	論文	Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux. Journal of Bacteriology. （共著）
79.	2008/09	論文	The uncharacterized transcription factor YdhM is the regulator of the nemA gene, encoding N-ethylmaleimide reductase. Journal of bacteriology 190(17),pp.5890-7 （共著）
80.	2008	論文	The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions. Nucleic Acid Research （共著）
81.	2007/11	論文	RutR is the uracil/thymine-sensing master regulator of a set of genes for synthesis and degradation of pyrimidines. Molecular microbiology 66(3),pp.744-57 （共著）
82.	2007/08	論文	folA, a new member of the TyrR regulon in Escherichia coli K-12. Journal of bacteriology 189(16),pp.6080-4 （共著）
83.	2007/02	論文	The role of the omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli. FEMS microbiology letters 267(1),pp.51-5 （共著）
84.	2007	論文	folA, a new member of the TyrR regulon in Escherichia coli K-12. Journal of Bacteriology （共著）
85.	2007	論文	RutR is the uracil/thymine-sensing master regulator of a set of genes for synthesis and degradation of pyrimidines. Molecular Microbiology （共著）
86.	2007	論文	The role of the omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli. FEMS Microbiology Letters （共著）
87.	2005	論文	Systematic search for the Cra-binding promoters using genomic SELEX system. Genes to Cells （共著）
88.	2004	論文	Classification and strength measurement of stationary phase promoters by use of a newly developed promoter cloning vector. Journal of Bacteriology （共著）
5件表示
全件表示(88件)

■ 所属学会

1.		日本農芸化学会
2.		日本分子生物学会
3.		日本ゲノム微生物学会

■ 研究課題・受託研究・科研費

1.	2022/04～2025/03	大腸菌の全ての機能未知転写因子の制御ネットワークの同定基盤研究(C) （キーワード：ゲノム転写制御, 大腸菌, 機能未知転写因子, 遺伝子発現, Genomic SELEX）
2.	2019/04～2022/03	大腸菌全シグマ因子の制御標的全プロモーター同定の完成を目指して基盤研究(C) （キーワード：RNAポリメラーゼ, ゲノム転写制御, 大腸菌, Repressive promoter, プロモーター, 窒素欠乏, シグマ因子, Genomic SELEX, シグマ因子RpoN, NtrC, gSELEX, Constitutive promoter, gSELEX法, RpoN）
3.	2016/04～2019/03	大腸菌ゲノム転写制御における全シグマ因子の支配下全プロモーターの決定基盤研究(C) （キーワード：ゲノム生物学, RNAポリメラーゼ, ゲノム転写制御, 大腸菌, Genomic SELEX (gSELEX), プロモーター, シグマ因子, Genomic SELEX, 転写制御, 遺伝子発現調節, ゲノム, Constitutive promoter, 遺伝子発現, constitutive promoter, Inducible promoter）
4.	2012/04～2015/03	代謝制御ネットワークにおける転写因子ＣＲＰのアセチル化の役割の解析若手研究(B) （キーワード：CRP, 転写因子CRP, RNAポリメラーゼ, アセチル化, ゲノム転写制御, 大腸菌, 代謝制御, 100Sリボソーム, RMF, Genomic SELEX）
5.	2009～2010	病原性遺伝子制御因子LeuOによるゲノム転写包括制御機構の解明若手研究(B) （キーワード：SELEX-chip, 転写因子Cra, バイオフィルム, 転写因子CRP, サルファ剤耐性遺伝子, 転写因子LeuO, 大腸菌, 転写, 薬剤耐性, ゲノム発現制御, 病原性細菌, Genomic SELEX）

■ ホームページ

明治大学農学部農芸化学科ゲノム微生物学研究室（島田友裕研究室）

■ 受賞学術賞

1.	2020/04	長瀬研究振興賞 (ピルビン酸応答転写因子による炭素源代謝制御の全体像の解明)
2.	2008/03	日本ゲノム微生物学会日本ゲノム微生物学会研究奨励賞 (Genomic SELEXによる大腸菌機能未知転写因子の調節機能の同定)

■ 現在の専門分野

ゲノム生物学

■ 科研費研究者番号

10535230