1.
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2022/03
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論文
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Assessment of greenhouse tomato anthesis rate through metabolomics using LASSO regularized linear regression model. Frontiers in Molecular Biosciences (共著)
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2.
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2022/03
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論文
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Temporal Changes in Transcripts of Miniature Inverted-Repeat Transposable Elements during Rice Endosperm Development. The Plant Journal (共著)
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3.
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2022
|
論文
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Expression and localization of tight junction-related proteins in adult rat pituitary stem/progenitor cell niches. Journal of Reproduction and Development (共著)
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4.
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2021/10
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論文
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De novo assembly and annotation of the mangrove cricket genome. (共著)
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5.
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2021/01
|
論文
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Effect of Paternal Genome Excess on the Developmental and Gene Expression Profiles of Polyspermic Zygotes in Rice. Plants (共著)
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6.
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2020/12
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論文
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Rapidly evolving phosphoenolpyruvate carboxylase Gmppc1 and Gmppc7 are highly expressed in the external seed coat of immature soybean seeds (共著)
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7.
|
2020/09
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論文
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Double-Locking Mechanism of Self-Compatibility in Arabidopsis thaliana: The Synergistic Effect of Transcriptional Depression and Disruption of Coding Region in the Male Specificity Gene. Frontiers in Plant Science. (共著)
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8.
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2020/04
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論文
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Drought Stress Responses in Context-Specific Genome-Scale Metabolic Models of Arabidopsis thaliana (共著)
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9.
|
2020/04
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論文
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RAD-seq-Based High-Density Linkage Map Construction and QTL Mapping of Biomass-Related Traits in Sorghum Using a Japanese Landrace Takakibi NOG. (共著)
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10.
|
2020/04
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論文
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Transcriptome analysis of watercore in Pyrus pyrifolia by comparing pairs of susceptible and resistant F1 sibs. (共著)
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11.
|
2020/03
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論文
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Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels. (共著)
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12.
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2019/12
|
論文
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TRANSNAP: a web database providing comprehensive information on Japanese pear transcriptome. (共著)
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13.
|
2019/11
|
著書
|
Plant Omics Data Center and CATchUP: web databases for effective gene mining utilizing public RNA-Seq-based transcriptome data. (共著)
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14.
|
2019/11
|
論文
|
Comparison of shape quantification methods for genomic prediction, and genome-wide association study of sorghum seed morphology. (共著)
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15.
|
2019/11
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論文
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The plant-type phosphoenolpyruvate carboxylase Gmppc2 is developmentally induced in immature soy seeds at the late maturation stage: a potential protein biomarker for seed chemical composition. (共著)
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16.
|
2019/10
|
論文
|
Complete chloroplast genome sequence and phylogenetic analysis of wasabi (Eutrema japonicum) and its relatives. (共著)
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17.
|
2019/07
|
論文
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Pattern analysis suggests that phosphoenolpyruvate carboxylase in maturing soybean seeds promotes the accumulation of protein. (共著)
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18.
|
2019/06
|
著書
|
バイオインフォマティクスとはなにか (共著)
|
19.
|
2019/04
|
論文
|
Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants. Scientific Reports 9(1),pp.5888-5888 (共著)
|
20.
|
2019/02
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論文
|
Expression of genes from paternal alleles in rice zygotes and involvement of OsASGR-BBML1 in initiation of zygotic development. Plant and Cell Physiology 60(4),pp.725-737 (共著)
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21.
|
2019/01
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論文
|
Functional screening of salt tolerance genes from a halophyte Sporobolus virginicus and transcriptomic and metabolomic analysis of salt tolerant plants expressing glycine-rich RNA-binding protein. Plant Science 278,pp.54-63 (共著)
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22.
|
2018/09
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論文
|
Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles. Nature Communications 9(1),pp.3843 (共著)
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23.
|
2018/04
|
論文
|
Differentiation capacities of PS-clusters, adult pituitary stem/progenitor cell clusters located in the parenchymal-niche, of the rat anterior lobe. 13(4),pp.e0196029 (共著)
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24.
|
2018/04
|
論文
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Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily. The Plant Cell 30(4),pp.925-945 (共著)
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25.
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2018/03
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論文
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Comparative transcriptome analysis reveals distinct ethylene-independent regulation of ripening in response to low temperature in kiwifruit. BMC Plant Biol. 18(1),pp.47 (共著)
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26.
|
2018/03
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論文
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TodoFirGene: Developing transcriptome resources for genetic analysis of Abies sachalinensis Plant Cell Physiol 59(6),pp.1276-1284 (共著)
|
27.
|
2018/02
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論文
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Transcriptome of homoeologous genes deduced from the full-length cDNA clones of common wheat, Triticum aestivum L. J. Genet. Genomic Sci. 2018(3),pp.007 (共著)
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28.
|
2017/05
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論文
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Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data. DNA Research 24(4),pp.397-405 (共著)
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29.
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2017/03
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論文
|
A GLABRA1 ortholog on LG A9 controls trichome number in the Japanese leafy vegetables Mizuna and Mibuna (Brassica rapa subsp. nipposinica): evidence from QTL analysis. Journal of Plant Research 130(3),pp.539-550 (共著)
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30.
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2017/03
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論文
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High-throughput phenotyping of sorghum plant height using an unmanned aerial vehicle and its application to genomic prediction modelling. Frontiers in Plant Science 8,pp.421 (共著)
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31.
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2017/02
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論文
|
Development of simple sequence repeat markers in the halophytic turf grass Sporobolus virginicus and transferable genotyping across multiple grass genera/species/genotypes. Euphytica 213,pp.56 (共著)
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32.
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2017/01
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論文
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CATchUP: A web database for spatiotemporally regulated genes. Plant & Cell Physiology 58(1),pp.e3 (共著)
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33.
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2017/01
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論文
|
PlantExpress: A Database Integrating OryzaExpress and ArthaExpress for Single-species and Cross-species Gene Expression Network Analyses with Microarray-Based Transcriptome Data. Plant & Cell Physiology 58(1),pp.e1 (共著)
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34.
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2017/01
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論文
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TOMATOMICS: A Web Database for Integrated Omics Information in Tomato. Plant & Cell Physiology 58(1),pp.e8 (共著)
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35.
|
2017
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著書
|
Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza Sativa and Other Plant Species. Plant Genomics Databases. pp.229-240 (共著)
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36.
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2016/12
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論文
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The biosynthetic pathway of 2-azahypoxanthine in fairy-ring forming fungus. Scientific Reports 6,pp.39087 (共著)
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37.
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2016/10
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論文
|
Comparative analysis of microRNA profiles of rice anthers between cool-sensitive and cool-tolerant cultivars under cool-temperature stress. Genes & Genetic Systems 91,pp.97-109 (共著)
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38.
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2016/10
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論文
|
Identification of Reference Genes for Quantitative Expression Analysis Using Large-scale RNA-seq Data of Arabidopsis thaliana and Model Crop Plants Genes & Genetic Systems 91(2),pp.111-125 (共著)
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39.
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2016/05
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論文
|
Jasmonate-responsive ERF transcription factors regulate steroidal glycoalkaloid biosynthesis in tomato. Plant & Cell Physiology 57(5),pp.961-975 (共著)
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40.
|
2016/01
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著書
|
Databases for Solanaceae and Cucurbitaceae Research. Functional Genomics and Biotechnology in Solanaceae and Cucurbitaceae Crops. pp.31-42 (共著)
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41.
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2016/01
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論文
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Pleurochrysome: A web-database of Pleurochrysis transcripts and orthologues among heterogeneous algae. Plant and Cell Physiology 57(1),pp.e6 (共著)
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42.
|
2015/08
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著書
|
Expression Analysis and Genome Annotations with RNA Sequencing. Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches. pp.1-12 (共著)
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43.
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2015/08
|
著書
|
Omics Analysis and Databases for Plant Science. Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods, Second Edition pp.150-159 (共著)
|
44.
|
2015/08
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論文
|
The Arabidopsis TAC Position Viewer: a high-resolution map of transformation-competent artificial chromosome (TAC) clones aligned with the Arabidopsis thaliana Columbia-0 genome. The Plant Journal 83(6),pp.1114-1122 (共著)
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45.
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2015/04
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論文
|
Comprehensive analysis of transcriptome response to salinity stress in the halophytic turf grass Sporobolus virginicus. Frontiers in Plant Science 6,pp.241 (共著)
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46.
|
2015/01
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論文
|
De Novo Transcriptome Assembly of a Fern, Lygodium japonicum, and a Web Resource Database, Ljtrans DB. Plant & Cell Physiology 56(1),pp.e5 (共著)
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47.
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2015/01
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論文
|
Plant Omics Data Center: An Integrated Web Repository for Interspecies Gene Expression Networks with NLP-based Curation. Plant and Cell Physiology 56(1),pp.e9 (共著)
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48.
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2014/12
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論文
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A-WINGS: an integrated genome database for Pleurocybella porrigens (Angel's wing oyster mushroom, Sugihiratake). BMC Research Notes 7,pp.866 (共著)
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49.
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2014/12
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論文
|
Regulation of xylanase elicitor-induced expression of defense-related genes involved in phytoalexin biosynthesis by a cation channel OsTPC1 in suspension-cultured rice cells. Plant Biotechnology 31(4),pp.329-334 (共著)
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50.
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2014/10
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著書
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Omics databases and gene expression networks in plant sciences. Omics Technologies and Crop Improvement pp.1-14 (共著)
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51.
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2014/07
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論文
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Gene Expression of Pectic Polysaccharide Degrading Enzymes in On-tree Softened 'Hiratanenashi' Persimmon Fruit. Food Preservation Science 40(4),pp.185-193 (共著)
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52.
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2014/05
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著書
|
植物遺伝情報データベースの活用方法 遺伝子治療・診断の最先端技術と新しい医薬品・診断薬の開発 15(3) (共著)
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53.
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2014/03
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論文
|
Custom Microarray Analysis for Transcript Profiling of Dormant Vegetative Buds of Japanese Apricot during Prolonged Chilling Exposure. Journal of the Japanese Society for Horticultural Science 83(1),pp.1-16 (共著)
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54.
|
2014/02
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論文
|
Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum). Plant & Cell Physiology 55(2),pp.445-454 (共著)
|
55.
|
2013/12
|
論文
|
Characterization of ripening-associated genes using a tomato DNA macroarray, 1-methylcyclopropene, and ripening-impaired mutants. Postharvest Biology and Technology 86,pp.159-170 (共著)
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56.
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2013/10
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論文
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Cell type-specific transcriptome of Brassicaceae stigmatic papilla cells from a combination of laser microdissection and RNA sequencing. Plant & Cell Physiology 54(11),pp.1894-1906 (共著)
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57.
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2013/07
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論文
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A New Omics Data Resource of Pleurocybella porrigens for Gene Discovery. PLOS ONE 8(7),pp.e69681 (共著)
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58.
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2013/06
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論文
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ANALYSIS OF EXPRESSED SEQUENCE TAGS FROM RAPIDLY SOFTENED PULP OF PERSIMMON (DIOSPYROS KAKI THUNB.). Acta Horticulturae 996,pp.111-116 (共著)
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59.
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2013/05
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論文
|
EFFECT OF ASCORBATE ON PROLONGING SHELF LIFE OF PERSIMMON (DIOSPYROS KAKI THUNB.) FRUIT. Acta Horticulturae 989,pp.131-138 (共著)
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60.
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2013/03
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論文
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Functional genomics of tomato in a post-genome-sequencing phase. (共著)
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61.
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2012/11
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論文
|
Mapping of Micro-Tom BAC-end Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms. International Journal of Plant Genomics 8 (共著)
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62.
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2012/08
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論文
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Down-regulation of a Single Auxin Efflux Transport Protein in Tomato Induces Precocious Fruit Development. Journal of Experimental Botany 63(13),pp.4901-4917 (共著)
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63.
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2012/07
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論文
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454-Pyrosequencing of the Transcriptome in Leaf and Flower Buds of Japanese Apricot (Prunus mume Sieb. et Zucc.) at Different Dormant Stages. Journal of the Japanese Society for Horticultural Science 81(3),pp.239-250 (共著)
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64.
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2012/05
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論文
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The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485,pp.635-641 (共著)
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65.
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2012/04
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論文
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Comprehensive Functional Analyses of Expressed Sequence Tags in Common Wheat (Triticum aestivum). DNA Research 19(2),pp.165-177 (共著)
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66.
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2012/03
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論文
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Genome Signature Difference Between Deinococcus radiodurans and Thermus thermophilus. International Journal of Evolutionary Biology 6 (共著)
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67.
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2012/01
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Proteomic Characterization of the Greening Process in Rice Seedlings Using the MS Spectral Intensity-based Label Free Method. Journal of Proteome Research 11(1),pp.331-347 (共著)
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68.
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2011/10
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論文
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Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays. PLOS ONE 6(10),pp.e26162 (共著)
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69.
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2011/07
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著書
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Sustainable agriculture and new biotechnologies (共著)
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70.
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2011/06
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論文
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Transcriptome map of plant mitochondria reveals islands of unexpected transcribed regions. BMC Genomics 12,pp.279 (共著)
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71.
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2011/02
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論文
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Auxin Depletion in Barley Plants Under High-temperature Conditions Represses DNA Proliferation in Organelles and Nuclei via Transcriptional Alterations. Plant, Cell & Environment 34(2),pp.284-290 (共著)
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72.
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2011/02
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Distinct Gene Expression Profiles in Egg and Synergid Cells of Rice as Revealed by Cell Type-Specific Microarrays. Plant Physiology 155(2),pp.881-891 (共著)
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73.
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2011/02
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OryzaExpress : An Integrated Database of Gene Expression Networks and Omics Annotations in Rice Plant and Cell Physiology 52(2),pp.220-229 (共著)
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74.
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2011/01
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論文
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KaPPA-View4 : a Metabolic Pathway Database for Representation and Analysis of Correlation Networks of Gene Co-expression and Metabolite Co-accumulation and Omics Data. Nucleic Acids Research 39(1),pp.677-684 (共著)
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75.
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2010/12
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著書
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生物学辞典 (共著)
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76.
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2010/12
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論文
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Rice Expression Atlas in Reproductive Development. Plant & Cell Physiology 51(12),pp.2060-2081 (共著)
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77.
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2010/08
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Comparative Gene Expression Analysis of Susceptible and Resistant Near-isogenic Lines in Common Wheat Infected by Puccinia triticina. DNA Research 17(4),pp.211-222 (共著)
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78.
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2010/06
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論文
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Morphological and Gene Expression Analysis Under Cool Temperature Conditions in Rice Anther Development. Genes & Genetic Systems 85(2),pp.107-120 (共著)
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79.
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2010/04
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論文
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Cytoplasmic-Nuclear Genomic Barriers in Rice Pollen Development Revealed by Comparison of Global Gene Expression Profiles Among Five Independent Cytoplasmic Male Sterile Lines. Plant & Cell Physiology 51(4),pp.610-620 (共著)
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80.
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2010/03
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論文
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Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics 11(1),pp.210 (共著)
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81.
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2010/01
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Gene Discovery Methods from Large-Scale Gene Expression Data. In Quantum Bio-Informatics III From Quantum Information to Bio-Informatics 1,pp.489-496 (共著)
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82.
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2009/11
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High Temperatures Cause Male Sterility in Rice Plants with Transcriptional Alterations During Pollen Development. Plant & Cell Physiology 50(11),pp.1911-1922 (共著)
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83.
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2009/03
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DAGViz : a Directed Acyclic Graph Browser That Supports Analysis of Gene Ontology Annotation. Plant Biotechnology 26(1),pp.9-13 (共著)
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84.
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2009/03
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Gibberellin Modulates Anther Development in Rice via the Transcriptional Regulation of GAMYB. The Plant Cell 21(5),pp.1453-1472 (共著)
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85.
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2009/03
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S ハプロタイプに基づく Brassica rapa L. Oleifera Group に属するツケナの遺伝的関係 近畿中国四国農業研究 14,41-46頁 (共著)
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86.
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2009/01
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Web Databases for Omics Data in Tomato. J. Japan. Soc. Hort. Sci. 78,pp.23-31 (共著)
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87.
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2008/10
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A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica. Genes & Genetic Systems 83(4),pp.321-329 (共著)
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88.
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2008/10
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Separated Transcriptomes of Male Gametophyte and Tapetum in Rice : Validity of a Laser Microdissection (LM) Microarray Plant & Cell Physiology 49(10),pp.1407-1416 (共著)
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89.
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2008/10
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Various spatiotemporal expression profiles of anther-expressed genes in rice. Plant & Cell Physiology 49(10),pp.1417-1428 (共著)
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90.
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2008/10
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論文
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採種地が異なる大和マナ (Brassica rapa L. Oleifera Group) の S ハプロタイプの推定 園芸学研究 7(4),505-510頁 (共著)
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91.
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2008/09
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Omics databases in plant science: key to systems biology Plant Biotechnology 25,pp.413-422 (共著)
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92.
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2008/02
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Efficient and High-throughput Vector Construction and Agrobacterium-mediated Transformation of Arabidopsis Thaliana Suspension-cultured Cells for Functional Genomics. Plant & Cell Physiology 49(2),pp.242-250 (共著)
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93.
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2008/02
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Expressed Sequence Tags from Persimmon at Different Developmental Stages. Plant Cell Reports 27(5),pp.931-938 (共著)
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94.
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2007/06
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EXPRESSION-BASED APPROACH TOWARD FUNCTIONAL CHARACTERIZATION OF TOMATO GENES THAT HAVE NO OR WEAK SIMILARITY TO ARABIDOPSIS GENES. Acta Horticulturae 745,pp.457-464 (共著)
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95.
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2006/11
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Dramatic Amplification of a Rice Transposable Element During Recent Domestication. Proceedings of the National Academy of Sciences 103(47),pp.17620-17625 (共著)
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96.
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2006/10
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Pattern and Rate of Indel Evolution Inferred from Whole Chloroplast Intergenic Regions in Sugarcane, Maize and Rice. DNA Research 13(5),pp.197-204 (共著)
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97.
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2006/08
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MiBASE : a Database of a Miniature Tomato Cultivar Micro-Tom. Plant Biotechnology 23(2),pp.195-198 (共著)
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98.
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2006/08
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Non-Biased Distribution of Tomato Genes with No Counterparts in Arabidopsis thaliana in Expression Patterns During Fruit Maturation. Plant Biotechnology 23(2),pp.199-202 (共著)
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99.
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2006/03
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A New Method for Gene Discovery in Large-Scale Microarray Data. ucleic Acids Research 34(5),pp.1532-1539 (共著)
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100.
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2005/09
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著書
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植物育種学辞典 (共著)
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101.
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2005/09
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KATANA : A Web-Based Guide to Public Databases for Arabidopsis Genomic Information. Plant Biotechnology 22(3),pp.225-229 (共著)
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102.
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2005/08
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Expressed Sequence Tags from the Laboratory-grown Miniature Tomato (Lycopersicon esculentum) Cultivar Micro-Tom and Mining for Single Nucleotide Polymorphisms and Insertions/deletions in Tomato Cultivars. Gene 356,pp.127-134 (共著)
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103.
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2005/07
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Expressed Sequence Tags of Full-length cDNA Clones from the Miniature Tomato (Lycopersicon esculentum) Cultivar Micro-Tom. Plant Biotechnology 22(2),pp.161-165 (共著)
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104.
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2002/12
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著書
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バイオデータベースの手取り足取り活用法 (共著)
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105.
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2002/09
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Cost Efficiency of Spatial Error Control in Single Plant Selection. Breeding Science 52(3),pp.177-184 (共著)
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106.
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2000/12
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Definition of the Probability Efficiency Index for Optimization of the Stepwise Yield Selection Procedures of Plant Varieties. Biometrics 56(4),pp.1213-1217 (共著)
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107.
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2000/03
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Optimization of the Number of Cycles and Intensity of Selection, and Population Size in Mass Selection : Selection for Single Traits in Outcrossing Plant Populations. Breeding Science 50(1),pp.37-44 (共著)
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108.
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1999/04
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A Theoretical Basis for Measuring the Efficiency of Selection in Plant Breeding. Heredity 82(4),pp.401-408 (共著)
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