Faculty Database - Suzuki Hiromi

■ Books and Papers

1.	2022/10	Article	Malic Enzyme, not Malate Dehydrogenase, Mainly Oxidizes Malate That Originates from the Tricarboxylic Acid Cycle in Cyanobacteria mBio 13(6),pp.e02187-22 (Collaboration)
2.	2007/03	Article	Development of Prediction Method for β strand Pairing in Antiparallel and Parallel Sheets using Statistical Theory pp.209-227 (Collaboration)
3.	2004/09	Article	Development of a new method for evaluating the distance between duble-stranded cirlular genomes based on the gene arrangements Bulletin of school of agriculture pp.(1-13) (Collaboration)
4.	2000/03	Article	A procedure for Detecting Similarity between Distantly Related Protein-Families In Begehr, H.G.W., Gilbert, R.P. and Kajiwara, J.(eds)Proceedings of Second International Congress ISAAC 2,pp.1275-1283 (Collaboration)
5.	1998	Article	A bacteriophage T4 DNA/Protein sequence database available on the WWW Res. Commum. Biochem. Cell&Molec. Biol. 2,pp.309-322 (Collaboration)
6.	1993/05	Article	Protein variant database:data interchangeable with the protein sequence database and nonsequence database
7.	1993	Book	Improvement of Computational Environment in protein Engineering no. pp.214-221 (Collaboration)
8.	1993	Article	Protein variant database : data interchangeable with the protein sequence database and nonsequence database Prot. Engineer. Springer-Verlag 6,pp.1026 (Collaboration)
9.	1992	Book	The Present condition and Tendency of Computer utilization in protein Engineering no. pp.307-343 (Collaboration)
10.	1992	Article	Protein Sequence Database Query System : 'TOPIQUS' pp.954-956 (Collaboration)
11.	1991	Article	A protein secondary structure (PSS) database Springer-VerlagProtein Seq Data Anal. 4,pp.97-104 (Collaboration)
12.	1991	Article	Principal Component Analysis to Detect the Similarity of Distantly Related Proteins : Its Application to Cytochromes c, c1 and f. Protein Sequence & Data Analysis 4,pp.33-42 (Collaboration)
13.	1990	Article	Discrimination between adaptive and nuetral amino acid substitutions in vertebrate hemoglobins Springer-VerlagJ. Mol. Evol. 31,pp.302-324 (Collaboration)
14.	1990	Article	Study on Evolution by using of protein Databases pp.79-88 (Collaboration)
15.	1988	Article	Regulation in the synthesis of Escherichia coli RNA polymerase proposed from sequence analysis Springer-VerlagProtein Sequence & Data Analysis 1,pp.355-361 (Collaboration)
16.	1987	Article	Theoretical analysis of single-round transcription experiments on trp leader region Biophysical SocietyBiophysical Journal 51,pp.407-412 (Collaboration)
17.	1986	Article	Theoretical evaluation of transcriptional pausing effect on trp leader sequence Biophysical SocietyBiophysical Journal 49,pp.425-435 (Collaboration)
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■ Conference Presentations

1.	2022/09/29	Pair-specific analysis of C_α distances between adjacent strands in β-sheets (The 60th Annual Meeting of the Biophysical Society of Japan)
2.	2021/11/27	Analysis of Cα distances between adjacent strands in β-sheets (The 59th Annual Meeting of the Biophysical Society of Japan)
3.	2021/03/20	Search for the evolutionary origin of α-tocopherol protein
4.	2019/12/05	Effect of disulfide bonds on the β-sheets is dependent on protein environment (The 42nd Annual Meeting of the Molecular Biology Society of Japan)
5.	2019/09/25	The effect of disulfide bonds on anti-parallel β-sheets on secreted protein folding (The 57th Annual Meeting of the Biophysical Society of Japan (BSJ2019))
6.	2018/11/29	Effect of disulfide bonds on the secondary structure assembly (The 41st Annual Meeting of the Molecular Biology Society of Japan)
7.	2018/09/15	Do disulfide bonds relate to β-strnad assembly in anti-parallel manner ? (The 56th Annual Meeting of the Biophysical Society of Japan)
8.	2017/12/07	Analysis of alignment patterns of amino acid triplets located on adjacent β-strands (Consortium of Biological Sciences 2017)
9.	2017/09/20	Cys-Cys pairs on the strands arranged adjacently are preferred in β-sheets (The 55th Annual Meeting of the Biophysical Society of Japan)
10.	2016/12/01	The presence of α-helices between β-strands has effect not only on forming parallel pairing but also on β-strand pairing propensity. (The 39th Annual Meeting of the Molecular Biology Society of Japan)
11.	2016/11/25	Analysis of amino acid triplet patterns in β-sheets (The 54th Annual Meeting of the Biophysical Society of Japan)
12.	2015/12/02	Alignment patters of amino acid triplets in β-sheets have accurate preference not only for combination of amino acid residues byt also for hydrogen bonding formation (BMB2015)
13.	2015/09/14	The effect of α-helices on β-strand pairing propensity (The 53rd Annual Meeting of the Biophysical Society of Japan)
14.	2014/11/26	Different amino acid pairing propensity in edge and central strands affect β-sheet order (The 37th Anuual Meeting of the Molecular Biology Society of Japan)
15.	2014/09/26	Pairing propensity in β-sheets is quite deffent between edge and central strands (The 52nd Annual Meeting of the Biophysical Society of Japan)
16.	2013/12/05	The effect of differences in amino acid sequence and propensity in edge and central region on the β-sheet formation (The 36th Anuual Meeting of the Molecular Biology Society of Japan)
17.	2013/10/28	Edge and central strands show a different prosensity for pairing partneres (The 51st Annual Meeting of the Biophysical Sociery of Japan)
18.	2012/12/14	The role of Edge strand discrimination on Prediction of β-sheet formation (The 35th Anuual Meeting of the Molecular Biology Society of Japan)
19.	2012/09/22	How do β-strands determine their positions in β-sheets ? (The 50th Annual Meeting of the Biophysical Sociery of Japan)
20.	2011/12/14	Amino acid pairing propensity plays an important role for β-strand alignment in anti-parallel sheets more than in parallel sheets (The 34th Anuual Meeting of the Molecular Biology Society of Japan)
21.	2011/09/18	Development of prediction method for β-sheet formation using amino acid pairing propensity (2) (The 49th Annual Meeting of the Biophysical Sociery of Japan)
22.	2010/12/08	Role of amino acid pairing propensity on β-sheet formation (BMB2010 Biochemistry and Molecular Biology)
23.	2010/09/22	Development of prediction method for β-sheet formation using amino acid pairing propensity (The 48th Annual Meeting of the Biophysical Society of Japan)
24.	2009/12/12	Role of amino acid pairing propensity on determination of strand order in β-sheets (The 32nd Anuual Meeting of the Molecular Biology Society of Japan)
25.	2009/11/01	Effect of amino acid pairing propensity on β-strand order in the β-sheets (The 47th Annual Meeting of the Biophysical Society of Japan)
26.	2007/12/23	Development of prediction method for β stand register using stastical thory
27.	2006/06	Development of a method classifying edge strands from central strands (20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress)
28.	2001/11	Molecular phylogenetic analysis of proteins associated in energy metabolism
29.	1999/08	A procedure for detecting similarity between distantly related protein families
30.	1998/12	"Molecular evolution of flagellar proteins,FlgB,C,E,F and G"
31.	1998/12	Sequence analysis and molecular evolution among the SKI2 subfamily helicases from Saccharomyces cerevisiae
32.	1998/11	A Genomic Database of Bacteriophage T4 : Comparison of Codon Usage Preferences in Phage-Host Systems
33.	1996/10	TOPIQUS a Multidatabase Retrieval System (15th International CODATA Conference)
34.	1993/05	Protein variant database
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■ Academic Qualifications

1.	1985/04～1988/03	〔Doctorial Course〕, Graduate School, Division of Science and Engineering, Science University of Tokyo, Completed,
2.	1983/04～1985/03	〔Master Course〕, Graduate School, Division of Science and Technology, Tokyo University of Science, Completed,
3.	1979/04～1983/03	Faculty of Science, Science University of Tokyo, Graduated,

■ Email Addresses

■ Current Specialized Field

Biophysics, Molecular biology