Faculty Database - YOSHIMOTO KOKI

Books and Papers

Conference Presentations

Academic Qualifications

Career History

Research Topics, Consignment Studies & KAKENHI Researches

Current Specialized Field

（Last updated : 2024-04-18 17:12:21）

YOSHIMOTO KOKI
Department Undergraduate School , School of Agriculture

Position Professor

■ Books and Papers

1.	2024/04	Article	Autophagy maintains endosperm quality during seed storage to preserve germination ability in Arabidopsis. Proc. Natl. Acad. Sci. USA. 121(14),pp.e2321612121 (Collaboration)
2.	2024/02	Article	New insights into plant autophagy: molecular mechanisms and roles in development and stress responses. J. Exp. Bot. 75(5),pp.1234-1251 (Collaboration)
3.	2023/01	Article	Intracellular phosphate recycling systems for survival during phosphate starvation in plants. Front. Plant Sci. 13,pp.e108821 (Collaboration)
4.	2022/12	Article	Pexophagy suppresses ROS-induced damage in leaf cells under high-intensity light. Nat. Commun. 13,pp.7493 (Collaboration)
5.	2022/10	Article	Seed dormancy 4 like1 (SFL1) of Arabidopsis is a key regulator of phase transition from embryo to vegetative development. Plant J. 112(2),pp.460-475 (Collaboration)
6.	2022/06	Article	Autophagy triggered by iron mediated ER stress is an important stress response to the early phase of Pi starvation in plants. Plant J. 110(5),pp.1370-1381 (Collaboration)
7.	2022/06	Article	The role of reticulophagy under early phase phosphate starvation in plant cells. Autophagy Rep. 1(1),pp.256-259 (Collaboration)
8.	2021/09	Article	Autophagy balances the zinc–iron seesaw caused by Zn-stress. Trends Plant Sci. 26(9),pp.882-884 (Collaboration)
9.	2021/07	Article	A proposed role for endomembrane trafficking processes in regulating tonoplast content and vacuole dynamics under ammonium stress conditions in Arabidopsis root cells. Plant Signal. Behav. 16(9),pp.e1924977 (Collaboration)
10.	2021/04	Article	Ammonium stress increases microautophagic activity while impairing macroautophagic flux in Arabidopsis roots. Plant J. 105(4),pp.1083-1097 (Collaboration)
11.	2021/03	Article	Optimal distribution of iron to sink organs via autophagy is important for tolerance to excess zinc in Arabidopsis. Plant Cell Physiol. 62(3),pp.515-527 (Collaboration)
12.	2021/02	Article	RCB-mediated chlorophagy caused by oversupply of nitrogen suppresses phosphate-starvation stress in plants. Plant Physiol. 185(2),pp.318-330 (Collaboration)
13.	2020/10	Article	Thaumatin-like proteins and a cysteine protease inhibitor secreted by the pine wood nematode Bursaphelenchus xylophilus induce cell death in Nicotiana benthamiana. PLOS ONE 15(10),pp.e0241613 (Collaboration)
14.	2020/05	Article	Editorial: Organelle autophagy in plant development. Front. Plant Sci. 11,pp.1-2 (Collaboration)
15.	2020/05	Article	Importance of non-systemic leaf autophagy for suppression of zinc starvation induced-chlorosis. Plant Signal. Behav. 15(5),pp.e1746042 (Collaboration)
16.	2020/03	Article	Autophagy increases zinc bioavailability to avoid light-mediated reactive oxygen species production under zinc deficiency. Plant Physiol. 182(3),pp.1284-1296 (Collaboration)
17.	2019/11	Article	Autophagy and nutrients management in plants. Cells 8(11),pp.e1426 (Collaboration)
18.	2018/07	Article	Unveiling the molecular mechanisms of plant autophagy - From autophagosomes to vacuoles in plants. Plant Cell Physiol. 59(7),pp.1337-1344 (Collaboration)
19.	2018/03	Article	Autophagy controls resource allocations and protein storage accumulation in Arabidopsis seeds. J. Exp. Bot. 69(6),pp.1403-1414 (Collaboration)
20.	2014/07	Article	Autophagy, plant senescence, and nutrient recycling. J. Exp. Bot. 65(14),pp.3799-3811 (Collaboration)
21.	2014/05	Article	Plant autophagy is responsible for peroxisomal transition and plays an important role in the maintenance of peroxisomal quality. Autophagy 10(5),pp.936-937 (Collaboration)
22.	2014/05	Article	Stitching together the multiple dimensions of autophagy using metabolomics and transcriptomics reveals impacts on metabolism, development, and plant responses to the environment in Arabidopsis. Plant Cell 26(5),pp.1857-1877 (Collaboration)
23.	2014/04	Article	Assessment and optimization of autophagy monitoring methods in Arabidopsis roots indicate direct fusion of autophagosomes with vacuoles. Plant Cell Physiol. 55(4),pp.715-726 (Collaboration)
24.	2014/03	Article	Organ-specific quality control of plant peroxisomes is mediated by autophagy. J. Cell Sci. 127(6),pp.1161-1168 (Collaboration)
25.	2014/01	Article	Autophagy as a possible mechanism for micronutrient remobilization from leaves to seeds. Front. Plant Sci. 5(11),pp.1-8 (Collaboration)
26.	2013/12	Article	Highly oxidized peroxisomes are selectively degraded via autophagy in Arabidopsis. Plant Cell 25(12),pp.4967-4983 (Collaboration)
27.	2013/08	Article	Physiological and metabolic consequences of autophagy deficiency on the management of nitrogen and protein resources in Arabidopsis leaves depending on nitrate availability. New Phytol 199(3),pp.683-694 (Collaboration)
28.	2012/10	Article	A possible involvement of autophagy in amyloplast degradation in columella cells during hydrotropic response of Arabidopsis roots. Planta 236,pp.999-1012 (Collaboration)
29.	2012/08	Article	Beginning to understand autophagy, an intracellular self-degradation system in plants. Plant Cell Physiol. 53(8),pp.1355-1365 (Single)
30.	2012/05	Article	Autophagy machinery controls nitrogen remobilization at the whole-plant level under both limiting and ample nitrate conditions in Arabidopsis. New Phytol. 194(3),pp.732-740 (Collaboration)
31.	2012/04	Article	Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8(4),pp.445-544 (Collaboration)
32.	2010/10	Article	The Rab GTPase RabG3b functions in autophagy and contributes to tracheary element differentiation in Arabidopsis. The Plant Journal 64(1),pp.151-164 (Collaboration)
33.	2010/05	Article	Physiological roles of autophagy in plants: Does plant autophagy have a pro-death function? Plant Signal. Behav. 5(5),pp.494-496 (Single)
34.	2010/04	Article	Autophagy in plants and phytopathogens. FEBS Let. 584(7),pp.1350-1358 (Collaboration)
35.	2010/04	Article	Role of chloroplasts and other plastids in ageing and death of plants and animals: A tale of Vishnu and Shiva. Ageing Res Rev. 9(2),pp.117-130 (Collaboration)
36.	2010/01	Article	Plant autophagy puts the brakes on cell death by controlling salicylic acid signaling. Autophagy 6(1),pp.192-193 (Single)
37.	2009/09	Article	Autophagy negatively regulates cell death by controlling NPR1-dependent salicylic acid signaling during senescence and the innate immune response in Arabidopsis. Plant Cell 21(9),pp.2914-2927 (Collaboration)
38.	2009/02	Article	Autophagy plays a role in chloroplast degradation during leaf senescence in individually darkened leaves. Plant Physiol. 149(2),pp.885-893 (Collaboration)
39.	2009/01	Article	OsATG10b, an autophagosome component, is needed for cell survival against oxidative stresses in rice. Mol. Cells 27(1),pp.67-74 (Collaboration)
40.	2008/10	Article	Chloroplasts are partially mobilized to the vacuole by autophagy. Autophagy 4(7),pp.961-962 (Collaboration)
41.	2008/09	Article	Mobilization of Rubisco and stromal-localized fluorescent proteins of chloroplasts to the vacuole by ATG gene-dependent autophagic process. Plant Physiol. 148(1),pp.142-155 (Collaboration)
42.	2008/01	Book	Photosynthesis. Energy from the sun. (Collaboration)
43.	2008/01	Article	In vitro reconstitution of plant ATG8 and ATG12 conjugation systems essential for plant autophagy. J. Biol. Chem. 283(4),pp.1921-1928 (Collaboration)
44.	2007/03	Article	An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination. Plant Physiol. 143(3),pp.1132-1139 (Collaboration)
45.	2006/12	Article	AtATG genes, homologs of yeast autophagy genes, are involved in constitutive autophagy in Arabidopsis root tip cells. Plant Cell Physiol. 47(12),pp.1641-1652 (Collaboration)
46.	2005/07	Article	The crystal structure of plant ATG12 and its biological implication in autophagy. Autophagy 1(2),pp.119-126 (Collaboration)
47.	2004/11	Article	Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy. Plant Cell 16(11),pp.2967-2983 (Collaboration)
48.	2003/06	Article	A novel selection method based on the expression level of green fluorescent protein measured with a quantitative fluorescence imager. Plant Biotechnol. 20(2),pp.165-168 (Collaboration)
49.	2001/06	Article	Comparison of strength of endogenous and exogenous promoters in Arabidopsis thaliana chloroplasts. Plant Biotechnol. 18(2),pp.135-142 (Collaboration)
50.	1999/05	Article	Non-invasive quantitative detection and applications of nontoxic-, S65T-type green fluorescent protein in living plants. Plant J. 18(4),pp.455-463 (Collaboration)
51.	1997/12	Article	Leaf specifically expressed genes for polypeptides destined for chloroplasts with domains of σ70 factors of bacterial RNA polymerases in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 94(26),pp.14948-14953 (Collaboration)
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■ Conference Presentations

1.	2023/07/05	Autophagy Contributes to Seed Germination in Arabidopsis thaliana (The 14th International Society for Seed Science Conference)
2.	2022/10/24	Autophagy is important for adaptation to calcium deficiency in plants (The 10th International Symposium on Autophagy)
3.	2022/10/24	Excess supply of nitrate induces chlorophagy under phosphate starvation in plants (The 10th International Symposium on Autophagy)
4.	2022/10/24	Exploring factors involved in plant-specific microautophagy driven by vacuolar membrane dynamics (The 10th International Symposium on Autophagy)
5.	2022/10/24	Wide-range zinc homeostasis management via autophagy in plants (The 10th International Symposium on Autophagy)
6.	2021/03/15	Importance of autophagy in phosphate recycle system
7.	2019/03/15	Plant autophagy: an intracellular system for bulk and selective self-degradation (Japan-Taiwan Plant Biology 2019)
8.	2018/11/12	Physiological meanings of plant autophagy in response to environmental stresses. Aiming to elucidate plant specific functions of autophagy (XVI Latin American Plant Physiology Congress)
9.	2018/09/05	Molecular mimicry: Parasitic Strategy of Bursaphelenchus xylophilus
10.	2016/03	Adaptation of metabolism in autophagy-defective plants during environmental stresses
11.	2015/10	Organelle degradation by autophagy, an intracellular self-degradation system (11th International Congress of Plant Molecular Biology)
12.	2012/07	Plant autophagy negatively regulates cell death by controlling salicylic acid signaling during senescence and the innate immune response (The10th Gordon research conference:Plant senescence)
13.	2010/11	New insights into the physiological role of autophagy in plants. (Symposium Perspective of Plant Science 2010)
14.	2010/06	Plant autophagy negatively regulates cell death by controlling salicylic acid signaling during senescence and the innate immune response (21st International Conference on Arabidopsis Research)
15.	2009/09	The role of plant autophagy in nutrient starvation and aging (5th International Symposium on Autophagy)
16.	2004/06	Plant autophagy: Autophagy-defective mutants exhibited early senescence (The 8th Gordon research conference: Plant senescence)
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■ Academic Qualifications

1.	1991/04～1995/03	University of Shizuoka, Graduated,
2.	1995/04～1997/03	〔Doctorial Course (1st Semester)〕, University of Shizuoka, Completed,
3.	1997/04～2001/03	〔Doctorial Course (2nd Semester)〕, University of Shizuoka, Accomplished credits for doctoral program
4.	2001/09 Degree Acquisition	University of Shizuoka,

■ Career History

2021/04～

Professor

■ Research Topics, Consignment Studies & KAKENHI Researches

1.	2012/09～2016/09	Role of autophagy in plant adaptation to nitrate and sulfate limitaion in environment (Key Word : )
2.	2011/12～2015/12	Clever survival strategy for plants: selective degradation of organelle/proteins via autophagy in response to environmental stresses (Key Word : )

■ Current Specialized Field

Plant molecular biology and physiology, Cell biology, Plant nutrition and soil science